Research

I am currently collaborating with CNR ISTC on computational brain models of neurological diseases.

Check out my new book Simulating the brain [1]!

University Notes

Here are some university notes and various (hopefully) useful documents:

• Numerical optimization course: Introductiory slides to numerical optimization.
• Numerical modelling and simulation as a tool to study the parkinsonian disease: Numerical simulation of monoamines interactions in rats.
• Modelli numerici per la simulazione: Notes and excercises on numerical methods.
• Statistical methods for data analysis: Intrductory slides to statistical methods for data analysis.
• Metodi di approssimazione: Notes, exercises and implementations from the approximation methods course.
• Calcolo numerico: Notes from the numeric calculus course.
• Metodi numerici per la grafica: Notes from the numerical methods for computer graphics course.
• Studio della camminata con accelerometri e GPS: Study of the gate cycle with accelerometers and GPS.

Publications

[1] Daniele Caligiore and Samuele Carli (2025) Simulating the Brain: A Four-Step Method using Ordinary Differential Equations and Python Springer 978-981-96-2717-2

[2] Samuele Carli, Aurelia Schirripa, Pierandrea Mirino, Adriano Capirchio, Daniele Caligiore (2025) The role of the prefrontal cortex in cocaine-induced noradrenaline release in the nucleus accumbens: a computational study Biological Cybernetics 10.1007/s00422-025-01005-5

[3] Samuele Carli, Luigi Brugnano, Daniele Caligiore (2024) Simulating combined monoaminergic depletions in a PD animal model through a bio-constrained differential equations system Frontiers in Computational Neuroscience 10.3389/fncom.2024.1386841

[4] Laura Rueda, Sunje Dallmeier-Tiessen, Patricia Herterich, Samuele Carli, Salvatore Mele, Simeon Warner (2013) Providing Meaningful Information in a Large Scale Digital Library – A Case Study Research and Advanced Technology for Digital Libraries 978-3-642-40501-3

[5] Travis C. Brooks, Samuele Carli, Sunje Dallmeier-Tiessen, Salvatore Mele, Henning Weiler (2011) Authormagic in INSPIRE: Author Disambiguation in Scholarly Communication Proceedings of the 3rd International Conference on Web Science